Moonroof not closing properly

[Fast4esT]

I had the moonroof out when I painted the roof of the car, not everything is back together the glass opens fine but will not close, it goes maybe half way and reopens. If I turn the dial 1 click at a time I can close it. I have also replaced the dial. Is the sunroof like the auto windows, it needs its parameters set? Do I need vagcom?
Sometimes, when I get to the last click of the dial before closed, it takes a couple tries to respond or it reopens again. I feel like it’s behaving as if something is in the way,

Thanks

[EuroxS4]

try lubing the guides.Were they covered and masked off before paint??It sounds like its hitting pinch protection.

[Fast4esT]

Covered very well yes, I’ll grease them however

[Fast4esT]

where is the pinch protection?