I just did this and am putting my setup back in. I bought a "swap kit" from a seller who supposedly had sold many. the kit came missing many miscellaneous nuts, bolts, lines, and pieces needed for the swap. S4 wiki has a list of the parts needed, although I found the list of bolts for the trans to engine bell-housing to be a bit off.
piecing a kit together on your own could be tedious, but if you're very organized it may be a great way to go and ensure you get everything you need. you're going to want to go tax-auditor like in listing and checking every part needed. if I were to do it again, I would consider going with a very reputable seller of a kit. I didn't buy from him, but from what I gathered, Scott at advanced automotion sells a pretty comprehensive swap kit for a decent price. also rebuilds the 01E he sends you.
co-part.com might be okay if you buy the entire car. only issue is you don't know what kind of driving condition the car was in. they're a salvage auction house, so the car may have be crushed in an accident, damaging parts etc. it's a little more risky.
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